Let's not forget - in a cynical attempt to avoid being guilty of discrimination, she also apparently stopped issuing marriage licenses for all, even "KimDavis sanctioned" people.
Really, one "I found Jebus" fundie can hold so many people's lives to ransom to get her own warped way?
Her only option now is to resign. There is no other outcome to this. The court should not and cannot back down. She cannot 'allow' things in her name that she previously claimed she couldn't because of conscience / principle and we know fundies never say "oh, I was wrong" (except when caught on Ashley Madison).
I predict a resignation in her future or else an impeachment.