VG - it is true that hypothesis lacks the verifiable evidence but ultimately a sound theory will be evidence based. Would I have faith (trust) in a hypothesis? I may possibly find the notion plausable however faith (or trust or acceptance) in it's veracity would only come once sufficient evidence had been collated and verified.
I certainly wouldn't have confidence in the ability of an aeroplane to fly if the science around powered flight was purely hypothesis.
As expressed by other posters, there is also a big difference in how science views stated positions on a matter than how religion tends to.
We all, especially the less scientifically knowledgable we are, place confidence in some things without knowing the full detail (the example of flight once again). That is not the same as religious faith. It is easy to find the information as to exactly why a plane flies. The same cannot be said for pretty much anything I had deep faith in as a Jehovah's Witness.