I would wait and see. It might not be as bad as we fear. Turkey is an unusual place where the army is essentially given the duty of protecting the secular nature of the state if it seems like a religious theocracy is taking too much of a hold. The whole creation of the republic under Ataturk set the benchmark and he and his approach is still revered greatly.
There is of course a greater risk of attention being deflected from control of the border with Syria and the Kurds may see an opportunity to further their ends in the area but I suspect whoever is doing this is looking to swing the pendulum back towards democracy and secularism. Keeping the West onside and minimising risk of decreased security in the south east would seem key to that aim.
Of course we will see what transpires...